PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G253100.1.p
Common NameLOC101761009, SETIT_015156mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 214aa    MW: 23367.2 Da    PI: 5.5108
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G253100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.87.8e-3871071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +kll +lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l
  Seita.6G253100.1.p   7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHKVFGASNASKLLMHLPISDRCEAAVTMSYEAQARLQDPIYGCVAHIFSLQQQVVSL 97 
                         7*************************89*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael++ k++
  Seita.6G253100.1.p  98 QAELESFKAQ 107
                         ****998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6486108IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-357104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTGLGSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KLLMHLPISD  60
RCEAAVTMSY EAQARLQDPI YGCVAHIFSL QQQVVSLQAE LESFKAQTTQ GYGDGSLTSN  120
PQKEKREILT PSMQDGQLFF HPTMASNSSV KSESQLFSTN DCFTSVSTQY SEGYEPDLCM  180
PDYNSNPSCN MQGSGYHDMD DLQSVAFSYL NEA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6726701e-105JN672670.1 Eragrostis tef bio-material GRIN PI524434 clone Tefdw3b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974249.11e-160PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9M2J71e-66LBD29_ARATH; LOB domain-containing protein 29
TrEMBLK3YLN21e-160K3YLN2_SETIT; Uncharacterized protein
STRINGSi015156m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.19e-68lateral organ boundaries-domain 29